PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 176aa    MW: 20267.3 Da    PI: 9.0083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001385107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg+ F     L  H+r+H
  XP_016483035.1  85 HECSFCGEEFALGQALGGHMRKH 107
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-837107No hitNo description
SMARTSM003550.583961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2453966IPR007087Zinc finger, C2H2
PfamPF139124.9E-113962IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-483110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1285107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.20185112IPR007087Zinc finger, C2H2
PfamPF139121.4E-885110IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MALKRSREEE SVLSVEKLAM ANCSDIMKRN QSIRHSKIFE CKTCKKQFDS FQALGGHRAS  60
HKNTAIKLML MSTFPNELPV KPKKHECSFC GEEFALGQAL GGHMRKHRDE LNQLNQQQQY  120
QNKKKKKLEE RSDISDREDG KKEKDLGSEG IFFLDLNLTP YENELMAGIV PVHSWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483035.11e-130PREDICTED: zinc finger protein ZAT12-like
TrEMBLO220893e-53O22089_PETHY; ZPT2-9
STRINGPGSC0003DMT4000779332e-49(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-30C2H2 family protein